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Course Outline
Introduction to Fiji and ImageJ
- Overview of Fiji and its applications in scientific research
- Understanding ImageJ’s architecture and plugins
- Installing and setting up Fiji for optimal performance
Basic Image Processing Techniques
- Image acquisition and import formats
- Adjusting contrast, brightness, and applying filters
- Image stacking and projection methods
Advanced Image Analysis
- Segmentation techniques: thresholding and edge detection
- Object counting and particle analysis in histological samples
- Measuring areas, perimeters, and other morphological features
Working with Biological Samples
- Processing images of histological tissues, blood cells, and algae
- Color deconvolution and analysis of stained tissues
- Time-lapse analysis and tracking cell movement
Automation and Customization
- Creating and running macros for repetitive tasks
- Using Fiji plugins for specialized analyses
- Basic scripting with ImageJ Macro Language (IJM)
Data Management and Reporting
- Exporting results and generating reports
- Annotating images and preparing data for publication
- Best practices for reproducible image analysis
Summary and Next Steps
Requirements
- Basic understanding of biological imaging concepts
- Familiarity with microscopy and histological techniques
- Basic computer literacy
Audience
- Researchers in biotechnology and environmental toxicology
- Laboratory technicians working with histological and cellular imaging
- Scientists interested in quantitative image analysis
14 Hours
Delivery Options
Private Group Training
Our identity is rooted in delivering exactly what our clients need.
- Pre-course call with your trainer
- Customisation of the learning experience to achieve your goals -
- Bespoke outlines
- Practical hands-on exercises containing data / scenarios recognisable to the learners
- Training scheduled on a date of your choice
- Delivered online, onsite/classroom or hybrid by experts sharing real world experience
Private Group Prices RRP from €4560 online delivery, based on a group of 2 delegates, €1440 per additional delegate (excludes any certification / exam costs). We recommend a maximum group size of 12 for most learning events.
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Public Training
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