A pipeline for high-quality bacterial genome construction using ONT sequencing
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Introduction to bioinformatics command line tools on the cloud, developed by Dartmouth College
Practical and home works in the discipline Bioinformatics.
workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.
The personal web site of Shaun Jackman
This repository contains an R markdown and HTML output focusing on the genomic analysis of SARS-CoV-2 and related coronaviruses in bats and pangolins. It includes phylogenetic trees and nucleotide frequency visualizations to study the virus evolution and zoonotic transmission patterns. Updated on October 1, 2024.
Snakemake pipeline for assembling and annotating bacterial genomes from NGS paired-end data.
pacbioHifi genome assembly benchmarks
The genome of the contractile demosponge Tethya wilhelma
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