Fast and accurate de novo assembler for long reads
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May 10, 2024 - C
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genome-assembly
Here are 8 public repositories matching this topic...
De novo genome assembly and multisample variant calling
genomics variant-calling kmer cortex genome-analysis genome-assembly de-bruijn-graphs genome-graph contigs
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Mar 28, 2019 - C
A bioinformatic toolkit to align genome assemblies into pangenome graphs
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Mar 27, 2025 - C
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
bioinformatics genome-analysis genome-assembly blend read-mapping de-novo-assembly minimizers strobemers seed-matching fuzzy-seeds read-overlapping spaced-seeds
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May 10, 2023 - C
guided genome assembler using colored overlap graphs
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Jan 13, 2021 - C
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
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Oct 14, 2019 - C
A de novo genome breakpoint sequence assembly algorithm
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Dec 11, 2018 - C
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