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Demo for relational db with cognee #620

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merged 2 commits into from
Mar 8, 2025

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hibajamal
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@hibajamal hibajamal commented Mar 7, 2025

Description

This demo uses pydantic models and dlt to pull data from the Pokémon API and structure it into a relational format. By feeding this structured data into cognee, it makes searching across multiple tables easier and more intuitive, thanks to the relational model.

DCO Affirmation

I affirm that all code in every commit of this pull request conforms to the terms of the Topoteretes Developer Certificate of Origin

Summary by CodeRabbit

  • New Features
    • Introduced a comprehensive Pokémon data processing pipeline, available as both a Python script and an interactive Jupyter Notebook.
    • Enabled asynchronous operations for efficient data collection and querying, including an integrated search functionality.
    • Improved error handling and data validation during the data fetching and processing stages for a smoother user experience.

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coderabbitai bot commented Mar 7, 2025

Walkthrough

The project now includes a new Python script and a new Jupyter notebook that implement a complete Pokémon data processing pipeline. Both files define data point classes for Pokémon and abilities, and introduce functions to fetch data via HTTP requests, load JSONL files, and process the data asynchronously using the DLT and Cognee libraries. Error handling and environment configuration are integrated to ensure robust data collection and processing.

Changes

File Path Change Summary
examples/python/…/pokemon_datapoints_example.py Added a new script that defines data point classes (Abilities, PokemonAbility, Pokemons, Pokemon) and functions for data fetching (pokemon_list, pokemon_details), data loading (load_abilities_data, load_pokemon_data), and asynchronous processing (setup_and_process_data, pokemon_cognify, main).
notebooks/…/pokemon_datapoints_notebook.ipynb Introduced a notebook version of the pipeline with similar data point classes and functions (pokemon_list, pokemon_details, load_abilities_data, load_pokemon_data) alongside an async initializer (initialize_cognee) to manage environment setup and data processing.

Sequence Diagram(s)

sequenceDiagram
    participant User as User
    participant Main as Main/Notebook Entry
    participant Setup as Data Setup (async)
    participant Fetch as Data Fetch (pokemon_list/pokemon_details)
    participant Loader as Data Loader (load_abilities_data/load_pokemon_data)
    participant Cognee as Cognee Engine
    User->>Main: Trigger data process
    Main->>Setup: Initialize environment and DLT pipeline
    Setup->>Fetch: Retrieve Pokémon list and details from API
    Fetch-->>Setup: Return Pokémon data
    Setup->>Loader: Load JSONL data and map abilities
    Loader-->>Setup: Return structured data
    Setup->>Cognee: Process data asynchronously via Cognee
    Cognee-->>Setup: Return processed results
    Setup-->>Main: Complete data processing
Loading

Poem

I'm a rabbit who loves to code,
Hopping through data in a joyful mode.
Pokémon details dance on my screen,
Async magic makes the pipeline keen.
With carrots and bytes, our work's a dream!

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Actionable comments posted: 0

🧹 Nitpick comments (13)
notebooks/pokemon_datapoints_notebook.ipynb (7)

105-110: Potential pagination improvement
Implementation is straightforward. However, if you need more than 50 records or want to retrieve them in multiple pages, consider passing an offset parameter to handle additional data segments.


134-141: Potential performance bottleneck
pokemon_details fetches each Pokémon's details in a loop, leading to serial HTTP requests. For large datasets, consider concurrency or parallel requests to improve performance.


205-221: Consider consolidating JSON line parsing
Both load_abilities_data and load_pokemon_data parse JSONL in a similar pattern. A shared helper function can DRY (Don't Repeat Yourself) this logic, improving maintainability.


245-305: Validate the presence of keys in the JSON
Several keys (_dlt_id, _dlt_parent_id, etc.) are assumed to exist in the JSON. If the data is invalid or missing these keys, a KeyError will occur. Consider adding validation or fallback logic.


361-369: Add exception handling for prune and setup steps
If any of these async steps fail, the system might be left in a partially pruned state. Consider error handling and logging to maintain system integrity.

Would you like me to generate a robust error handling snippet for these steps?


401-416: Consider capturing partial failures
When invoking run_tasks, if certain data points fail, the code currently just prints results. You may want to handle partial failures or generate a report of which items failed to be stored.


474-484: Enhance search to handle edge cases
Currently, you search specifically for "pokemons?". Consider more flexible input or error handling to gracefully handle empty queries or invalid user input.

examples/python/pokemon_datapoints_example.py (6)

70-74: Pagination and offset consideration
This function retrieves a subset of Pokémon. If you need complete data or larger sets, consider adding an offset parameter or concurrency to handle multiple pages efficiently.


76-82: Potential performance bottleneck
Fetching each Pokémon in a loop might slow down for large volumes. Explore concurrency or a batch approach for efficiency.


85-99: Validate JSON fields
The code assumes ability__name and _dlt_id exist in every JSON line. Add a validation step or default fallback to avoid unexpected KeyError.


120-155: Enhanced error messaging
This function already raises FileNotFoundError if no JSONL files are found. Consider logging or providing instructions to the user to place data in the expected directory.


156-184: Handle potential errors in pruning
Just as with the notebook, if pruning or system setup fails, it can cause partial states. Adding try-except blocks can help handle these failures gracefully.


185-191: Return or log results
The main function ends after calling pokemon_cognify. Consider returning final results or logs to clarify the outcomes to the user.

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📥 Commits

Reviewing files that changed from the base of the PR and between c204b9c and 4cec78e.

📒 Files selected for processing (2)
  • examples/python/pokemon_datapoints_example.py (1 hunks)
  • notebooks/pokemon_datapoints_notebook.ipynb (1 hunks)
🔇 Additional comments (1)
examples/python/pokemon_datapoints_example.py (1)

100-118: Check dictionary consistency
Here as well, keys like id, _dlt_id, and _dlt_parent_id are assumed to exist. If data is incomplete, you may encounter runtime errors. Consider verifying the presence of keys before usage.

@Vasilije1990 Vasilije1990 self-requested a review March 8, 2025 19:33
@Vasilije1990 Vasilije1990 merged commit 56427f2 into topoteretes:dev Mar 8, 2025
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