A single cell transcriptomics pipeline for QC, integration and making the data presentable

A Nextflow pipeline for evaluating assembly quality

Pipelines for the production of Treeval data

A simple pipeline for bacterial assembly and quality control

Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

QC pipeline to inspect your sequences

Compare the quality of multiple genomes, along with their annotations.

A pipeline for assembling and annotation of vectors

bacQC-ONT is a bioinformatics pipeline for the assessment of Oxford Nanopore sequence data

Single-file quality control prototyping pipeline for diverse mass spectrometry workflows.

Remove host reads from a microbial pathogen sequence dataset by aligning against a reference genome. Verify that the reads were removed using Kraken2/Bracken

Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow

Collect basic sequence QC metrics from nanopore reads

A Nextflow wrapper for HistoQC