A proposal for adding a useful pipe operator to JavaScript.

Get protein embeddings from protein sequences

🏭 PDF text extraction pipeline: self-hosted, local-first, Docker-based

Old archived draft proposal for smart pipelines. Go to the new Hack-pipes proposal at js-choi/proposal-hack-pipes.

Let's get the ball rolling on some Container-driven CI & CD

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

The Rx Asset Management System for motion picture production

Old specification for Hack pipes in JavaScript. Please go to the new specification.

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

A repository for GeneLab Training documentation.

zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.

The Space Game website is a .NET 7 web app written in C# that's deployed to ☁️ Azure Web App for Containers and Azure SQL ☁️. The infrastructure is deployed using Azure Bicep 💪, and the application is tested using Playwright 🎭 for browser tests and Azure Load Testing 📈 for load tests.

RNAseq analysis pipeline

Variant catalogue pipeline

Application CI/CD on OpenShift with Jenkins

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models

Previewing environments using containerized AWS Lambda functions

Example application for CI/CD demonstrations of GitHub Actions deal with Docker, ECR, EKS and Helmfile

In this workshop we will build a pipeline for a sample WordPress site in a stack. We will explore how to validate, lint and test templates, and dive deeper in tools that help you enforce compliance and network analysis, together with your development pipeline, for a full DevSecOps CI/CD.

This is a sample app created to illustrate the best practices outlined in the following blog post