Python package with helper tools for the nf-core community.

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Configure workflow/pipeline tests using yaml files.

Python wrapper around Nextflow.

Formalizing and benchmarking open problems in single-cell genomics

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

Automatic Packaging and Distribution of Bioinformatics Pipelines

AMR/VF LGT focused bacterial genomics analysis workflow

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.

Image Mass Cytometry analysis pipeline

Nextflow workflow syntax highlighting and snippets for Sublime Text 4

Nextflow pipeline for hyperparameter optimization of machine learning models

The Microbial Co-occurrence Network Explorer

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.

Mycobacterial pipeline

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis