Multi-platform, free open source software for visualization and image computing.

Advanced Normalization Tools (ANTs)

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

⚠️ OBSOLETE | Multi-platform, free open source software for visualization and image computing.

Neuroimaging analysis and visualization suite

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

NeuroInformatics Database

DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).

Analysis tools for sub-millimetre MRI of the cerebral cortex

FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC repository

Perform automatic skull-stripping for neuroimage analysis

A header-only, no-dependency, C++11 library for accessing FreeSurfer neuroimaging file formats.

Automated capture of audio-visual stimuli into BIDS datasets

a simple C++ graph analysis library

Command-line Bruker format converter

The squirrel neuroimaging data sharing library

Framework to compute average cortical profiles per ROI.

Analysis tools for 3D images of the cerebral cortex at submillimetre resolution

A specialized image analysis tool for automated detection and analysis of dendritic spines in neuronal images. 2D Span Auto streamlines workflow for neuroscience researchers with intuitive modules for image processing, dendrite extraction, and morphological analysis. The software features multiple denoising and binarization methods, accurate spine