The MG-RAST Backend -- the API server
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Apr 27, 2023 - Perl
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metagenomics
Here are 15 public repositories matching this topic...
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
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Feb 25, 2023 - Perl
A pipeline for construction and graphical visualization of annotated pangenome networks.
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Oct 24, 2018 - Perl
MetaCRAST: reference-guided CRISPR detection in metagenomes
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Mar 10, 2020 - Perl
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Sep 28, 2017 - Perl
A workflow tool to automatically run a bioinformatic pipeline
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Apr 25, 2022 - Perl
Database generation scripts for metagenome analysis tools used within MGX
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Oct 31, 2023 - Perl
This is a project aimed at building a compute resource with remote access, for metagenomics analysis.
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Apr 13, 2018 - Perl
Init of of metagenomics + metatranscriptomics + taxonomy + metabolism into graphDB
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Feb 27, 2019 - Perl
My CAMERA metagenomic annotation pipeline code as featured in "The JCVI standard operating procedure for annotating metagenomic shotgun sequencing data" and the "JCVI HMP metagenomic pipeline"
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Nov 14, 2017 - Perl
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Aug 2, 2018 - Perl
Silva OTU count table merger
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Nov 14, 2022 - Perl
Scalable Metagenomics Pipeline: Metagenome analysis including full metagenome assembly
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Dec 16, 2017 - Perl
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