Population-scale genotyping using pangenome graphs

Rare variant test software for next generation sequencing data

Fast calculations of linkage-disequilibrium in large-scale human cohorts

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

Forward-time simulation in Python using fwdpp

A Full Featured Multiple Sequence Alignment Editor.

High-level API for storing and querying sequence variant data

Fast API server for calculating linkage disequilibrium

TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

A toolbox for C++ devs wanting to build geospatial population genetics simulators !

Code and Simulations using Bayesian Approximate Kernel Regression (BAKR)

Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)

Lasso method for the estimation of joint genetic effects in GWAS

Locating Ancestry from SEquence Reads

This repository contains a C++ program that solves the Knapsack Problem using a Genetic Algorithm. The Knapsack Problem is a classic optimization problem where we aim to maximize the total value of items to be packed in a knapsack, given the knapsack's weight capacity and a set of items with their respective weights and values.

Simulators of spatial genetic diversity: for non-programmers and researchers!

U12-type intron prediction and file parsing utility in modern C++

CTPR software

A stable place for guidance source code http://guidance.tau.ac.il/ver2/source.php