A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

A Python library for reading and writing Flow Cytometry Standard (FCS) files

A data-centric flow/mass cytometry automated analysis framework

Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

Image Mass Cytometry analysis pipeline

A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

Single-cell dimensionality reduction evaluation and benchmarking toolkit

Pipeline for flow cytometry anlaysis

Shape-Out has been superseded by Shape-Out 2.

Cowfish: an Aquarium cytometry results analyzing package in Python

Open source static cytometry, initially targeting P. falciparum malaria

Transcriptic package for flow cytometry to demonstrate continuous integration for experiments

Autogating for gate 1 and gate 2 with U-Net.

Counts index files and folders produced by the BD Influx

Rename your BD Influx workspaces to the same name found in the 'Name' tag of the workspace

Extracts the sort statistics from the XDP server

A meta-package to test pipelines of image processing tools and cytometry-style calibration.