Skip to content

phonegor95/QAI_HPC_sarek_config

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

28 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

QAI HPC nf-core/sarek config

rawdata

put all raw data per sample in

data/sample/r'(L\d+)(?:_[^_]+)?_(1|2)\.fq\.gz$'

metadata.csv header

patient,sample,sex,status

samplesheet

python generate_samplesheet.py -r data -m metadata.csv

launch

conda activate
sh launch.sh

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published