Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Json schema improvements #218

Open
wants to merge 5 commits into
base: dev
Choose a base branch
from

Conversation

nvnieuwk
Copy link

This PR updates the JSON schemas to make validation better

@mirpedrol mirpedrol requested review from luisas and mirpedrol March 25, 2025 12:18
"MTMALIGN",
"FOLDMASON"
],
"errorMessage": "align name must be provided, has to be a string, cannot contain spaces and must be one of: CLUSTALO, FAMSA, KALIGN, LEARNMSA, MAFFT, MAGUS, MUSCLES, TCOFFEE, REGRESSIVE, UPP, 3DCOFFE, MTMALIGN or FOLDMASON",
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I am not sure we want to make this fail. It's a nice addition, but providing a wrong value won't make the pipeline fail, it will just not run.
In any case if we add this here we should update the docs on how to contribute.
What is your opinion @luisas

Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I think it is fine that we let it fail, but yes we need to update the contributing logs! :)

We should add this to this PR before merging - I will try to do it today :)

Copy link
Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Awesome thank you! Let me know if you want me to do anything else :)

@jen-reeve jen-reeve linked an issue Mar 25, 2025 that may be closed by this pull request
15 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

JSON schema: Multiplesequencealign
3 participants