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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 244 56

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 49 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 15 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 22 6

Repositories

Showing 10 of 250 repositories
  • monarch-phenologs Public
    monarch-initiative/monarch-phenologs’s past year of commit activity
    Python 3 BSD-3-Clause 0 14 0 Updated Mar 13, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 244 CC-BY-4.0 56 386 (2 issues need help) 49 Updated Mar 13, 2025
  • aurelian Public

    A motley crew of agents developed by the Monarch Initiative

    monarch-initiative/aurelian’s past year of commit activity
    Python 3 MIT 0 3 1 Updated Mar 13, 2025
  • graph-agent-devops Public

    Working directory for reusable "simple" devops for the graph agent

    monarch-initiative/graph-agent-devops’s past year of commit activity
    HCL 0 BSD-3-Clause 0 5 0 Updated Mar 13, 2025
  • upheno-cross-species-ingest Public
    monarch-initiative/upheno-cross-species-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Mar 12, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 68 4 Updated Mar 12, 2025
  • phenopacket2prompt Public

    GA4GH Phenopacket to LLM prompt

    monarch-initiative/phenopacket2prompt’s past year of commit activity
    Java 4 MIT 2 4 0 Updated Mar 12, 2025
  • monarchkg-model-organism-phenotype-transform Public
    monarch-initiative/monarchkg-model-organism-phenotype-transform’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Mar 12, 2025
  • ontotools-docker Public Forked from EBISPOT/ontotools-docker

    Configuration to deploy ontotools using docker compose

    monarch-initiative/ontotools-docker’s past year of commit activity
    Shell 1 Apache-2.0 10 2 0 Updated Mar 12, 2025
  • ELDER Public

    LLM embeddings for rare disease diagnostics

    monarch-initiative/ELDER’s past year of commit activity
    Python 4 0 5 0 Updated Mar 12, 2025
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