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PIEMA-benchmark-analysis Public
An analysis aimed at providing a benchmark of the PIEMA tool for T cell receptor (TCR) structural similarity identification. This analysis also extends PIEMA through the implementation of multiple …
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TCRPaired Public
A series of R scripts which can be used to 1) generate nonredundant benchmark datasets of paired-chain T cell receptor (TCR) binding data, and 2) visualize the various characteristics of this data.
HTML UpdatedDec 2, 2024 -
SwarmTCRTools Public
A series of R scripts intended to automate the SwarmTCR and SwarmTCRClassify tools for T cell receptor (TCR) sequence component importance and binding affinity prediction.
R UpdatedNov 19, 2024 -
DLMS Public
A lab management system (LMS) designed for the Denton Immunobiology Lab with underlying MySQL and PHP infrastructure.
PHP UpdatedMay 31, 2024 -
TCR-diversity-analysis Public
A brief analysis of donor diversity in publicly available T cell receptor (TCR) data.
HTML UpdatedDec 12, 2023 -
gorilla-cortisol-analysis Public
An analysis of cortisol levels and gut microbiome composition in primates (Gorilla) housed in U.S. zoos using the BugSeq-er pipeline.
R UpdatedAug 10, 2023 -
ILC-IBD-analysis Public
An analysis of innate lymphoid cell (ILC) populations in healthy and disregulated (IBD) gut-associated samples.
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NK-FlowSOM-analysis Public
Graph-based analysis of natural killer (NK) cell phenotypes in flow cytometry-based immunotherapy assays using FlowSOM.
R UpdatedMar 9, 2023