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@khanlab

Khan Computational Imaging Lab

  • 14 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 56 16

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 17 14

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 117 repositories
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 56 MIT 16 29 (1 issue needs help) 7 Updated Mar 12, 2025
  • hippunfold-atlases Public

    Surface-based atlases for hippunfold v2.x

    khanlab/hippunfold-atlases’s past year of commit activity
    0 0 0 0 Updated Mar 12, 2025
  • scattr Public

    BIDS app for structural connectivity between targeted regions

    khanlab/scattr’s past year of commit activity
    Python 4 MIT 3 4 (1 issue needs help) 1 Updated Mar 7, 2025
  • synth_nnunet Public
    khanlab/synth_nnunet’s past year of commit activity
    1 0 1 0 Updated Mar 5, 2025
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Jupyter Notebook 1 0 2 0 Updated Mar 4, 2025
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 3 MIT 1 9 (4 issues need help) 2 Updated Mar 4, 2025
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 10 1 2 Updated Mar 1, 2025
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Mar 1, 2025
  • hippunfold_deps Public

    Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

    khanlab/hippunfold_deps’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Feb 25, 2025
  • LOBE_analysis Public

    Snakemake workflow for LOBE study

    khanlab/LOBE_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 10, 2025
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