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21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

Jupyter Notebook 75,144 38,751 Updated Mar 14, 2025

A quality control analysis tool for high throughput sequencing data

Java 484 88 Updated Jan 10, 2024

Scripts for file processing and analysis in phylogenetics and phylogeography

Shell 11 3 Updated Jan 6, 2021

Results from our project "Using ecological niche modeling to predict the response of Hydrocotyle bonariensis to global climate change"

1 Updated Feb 14, 2022

Results from our project "Predicting the responses of Northern Gulf of Mexico coastal dune plant communities to climate change using ecological niche modeling"

1 Updated Feb 27, 2022

Bagley Lab website

HTML 1 5 Updated Oct 28, 2023

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

C++ 518 148 Updated Nov 17, 2023

Automatically exported from code.google.com/p/cdhit

Perl 657 132 Updated Oct 11, 2022

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

C 34 4 Updated Apr 27, 2021

Sequence simulator

C 52 17 Updated Feb 3, 2025

Automatically exported from code.google.com/p/figtree

Java 410 111 Updated Apr 1, 2024

Shell scripting utility functions and a bash script boilerplate template

Shell 515 160 Updated Jan 6, 2025

Utilities for automating bgc (Bayesian genomic cline) file prep, analysis, and results plotting

Shell 8 Updated Dec 21, 2020

A system-level, binary package and environment manager running on all major operating systems and platforms.

Python 6,734 1,749 Updated Mar 13, 2025

Accurate Species TRee ALgorithm

Java 253 69 Updated Apr 1, 2024

Testing hybridization using species trees

C 10 4 Updated Aug 25, 2017

Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics

Python 21 12 Updated May 30, 2023

Should you cite this software?

CSS 31 2 Updated Jul 2, 2020

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 2,027 333 Updated Nov 28, 2024

Recovering genes from targeted sequence capture data

Python 119 45 Updated Jan 8, 2025

Analyses done on sequence capture data from a Illumina HiSeq3000 and NextSeq, PE100 and PE150 respectively. The data were analyzed using the HybPiper pipeline

2 Updated Apr 4, 2018

Successful Job Applications and Grants

739 130 Updated Jan 2, 2025

a bash pipeline for RAD sequencing

Shell 55 41 Updated Jan 27, 2025

A statistical framework for ploidy estimation using NGS short-read data

C 56 7 Updated Apr 5, 2018

Exitwp is tool primarily aimed for making migration from one or more wordpress blogs to the jekyll blog engine as easy as possible.

Python 686 144 Updated Nov 4, 2019

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

JavaScript 171,769 79,041 Updated Mar 15, 2025

Minimal tutorial on making a simple website with GitHub Pages

Ruby 199 409 Updated Dec 26, 2023

Semantic Versioning Specification

7,394 713 Updated Jul 21, 2024

Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

Python 147 24 Updated Aug 8, 2024

Automatically exported from code.google.com/p/densitree

Java 26 3 Updated Feb 4, 2025
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