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SearchNovo Public
[ICLR 2025] Bridging the Gap between Database Search and De Novo Peptide Sequencing with SearchNovo
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DiscoGNNs Public
[ICDE 2024]Official implementation of ICDE 2024 paper "DiscoGNN: A Sample-Efficient Framework for Self-Supervised Graph Representation Learning"
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OT-Cleaner Public
[ICASSP 2022]OT-Cleaner: Label Correction as Optimal Transport
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IFM Public
[NeurIPS 2023] "Understanding the Limitations of Deep Models for Molecular Property Prediction: Insights and Solutions"
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[IJCAI 2023 survey track]A curated list of resources for chemical pre-trained models
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Mole-BERT Public
[ICLR 2023] "Mole-BERT: Rethinking Pre-training Graph Neural Networks for Molecules"
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molfeat Public
Forked from datamol-io/molfeatmolfeat - the hub for all your molecular featurizers
Python Apache License 2.0 UpdatedMay 22, 2023 -
papers_for_protein_design_using_DL Public
Forked from Peldom/papers_for_protein_design_using_DLList of papers about Proteins Design using Deep Learning
GNU General Public License v3.0 UpdatedFeb 27, 2023 -
pytorch-deep-learning Public
Forked from mrdbourke/pytorch-deep-learningMaterials for the Learn PyTorch for Deep Learning: Zero to Mastery course.
Jupyter Notebook MIT License UpdatedFeb 1, 2023 -
A curated list of resources for molecular graph representation learning.
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benchmarking-gnns Public
Forked from graphdeeplearning/benchmarking-gnnsRepository for benchmarking graph neural networks
Jupyter Notebook MIT License UpdatedAug 31, 2022 -
ProGCL Public
[ICML 2022] "ProGCL: Rethinking Hard Negative Mining in Graph Contrastive Learning"
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SimGRACE Public
Forked from mpanpan/SimGRACE[WWW 2022] "SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentation"
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awesome-self-supervised-gnn Public
Forked from ChandlerBang/awesome-self-supervised-gnnPapers about pretraining and self-supervised learning on Graph Neural Networks (GNN).
UpdatedMar 2, 2022 -
Graph-Reinforcement-Learning-Papers Public
Forked from SunQingYun1996/Graph-Reinforcement-Learning-PapersA curated list of graph reinforcement learning papers.
UpdatedDec 27, 2021 -
Co-training-based_noisy-label-learning Public
Forked from chengtan9907/Co-learning[ACM MM 2021 Oral Presentation] A unified framework for co-training-based noisy label learning methods.
Python UpdatedNov 8, 2021 -
grover Public
Forked from tencent-ailab/groverThis is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data
Python Other UpdatedSep 1, 2021 -
pretrain-gnns Public
Forked from snap-stanford/pretrain-gnnsStrategies for Pre-training Graph Neural Networks
Python MIT License UpdatedAug 11, 2021 -