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@epiverse-trace

Epiverse-TRACE

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 42 4

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 34 12

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 19 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 14 4

  6. epiCo epiCo Public

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    R 11 2

Repositories

Showing 10 of 61 repositories
  • git-rstudio-basics Public Forked from swcarpentry/git-novice

    Version Control with Git using Rstudio

    epiverse-trace/git-rstudio-basics’s past year of commit activity
    R 1 944 23 0 Updated Apr 18, 2025
  • safeframe Public

    Tagging, validating, and safeguarding data to help harden data pipelines.

    epiverse-trace/safeframe’s past year of commit activity
    R 0 0 2 0 Updated Apr 17, 2025
  • tutorials-middle Public

    Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.

    epiverse-trace/tutorials-middle’s past year of commit activity
    R 3 2 70 (3 issues need help) 5 Updated Apr 16, 2025
  • tutorials Public
    epiverse-trace/tutorials’s past year of commit activity
    R 3 4 38 (3 issues need help) 1 Updated Apr 16, 2025
  • epiverse Public

    Meta-package for the Epiverse-TRACE R packages

    epiverse-trace/epiverse’s past year of commit activity
    R 1 0 1 0 Updated Apr 16, 2025
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 2 3 8 (1 issue needs help) 4 Updated Apr 15, 2025
  • epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    epiverse-trace/epiparameter’s past year of commit activity
    R 34 12 52 (2 issues need help) 1 Updated Apr 15, 2025
  • simulist Public

    An R package for simulating line lists

    epiverse-trace/simulist’s past year of commit activity
    R 10 1 8 1 Updated Apr 15, 2025
  • etstats Public
    epiverse-trace/etstats’s past year of commit activity
    R 1 CC0-1.0 0 0 0 Updated Apr 15, 2025
  • epimodelac Public

    Training materials for the epimodelac workshop

    epiverse-trace/epimodelac’s past year of commit activity
    R 8 4 11 2 Updated Apr 15, 2025
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