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@DeepGraphLearning

MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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  1. torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1.5k 206

  2. ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 523 74

  3. GMNN Public

    Graph Markov Neural Networks

    Python 407 100

  4. GearNet Public

    GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)

    Python 284 29

  5. NBFNet Public

    Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

    Python 208 30

  6. ConfGF Public

    Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).

    Python 165 37

Repositories

Showing 10 of 49 repositories
  • GearBind Public

    Pretrainable geometric graph neural network for antibody affinity maturation

    Python 52 Apache-2.0 6 7 0 Updated Mar 18, 2025
  • scCello Public

    [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model

    Python 14 1 0 1 Updated Mar 11, 2025
  • ProteinTutorial_AAAI2025 Public

    https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/

    CSS 5 MIT 0 0 0 Updated Feb 27, 2025
  • ULTRA Public

    A foundation model for knowledge graph reasoning

    Python 523 MIT 74 2 0 Updated Feb 2, 2025
  • GraphAny Public

    GraphAny: Fully-inductive Node Classification on Arbitrary Graphs

    Python 131 MIT 15 1 1 Updated Feb 2, 2025
  • S3F Public

    Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)

    Python 32 MIT 2 2 0 Updated Dec 3, 2024
  • MATH60630A_2024A Public
    SCSS 0 0 0 0 Updated Nov 21, 2024
  • torchdrug Public

    A powerful and flexible machine learning platform for drug discovery

    Python 1,494 Apache-2.0 205 110 (1 issue needs help) 11 Updated Aug 11, 2024
  • graphvite Public

    GraphVite: A General and High-performance Graph Embedding System

    C++ 1,250 Apache-2.0 154 53 0 Updated Jun 14, 2024
  • esm-s Public

    Structure-Informed Protein Language Model

    Python 31 4 3 0 Updated Feb 15, 2024
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