Analysis pipelines for genomic sequencing data

A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

Differential methylation: Easy, Fast, Identification and ANnoTation

Whole Genome Bisulfite Sequencing Alignment pipeline

An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me