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✨ NEW: Add Nucleus Detection Engine #538

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✨ NEW: Add Nucleus Detection Engine #538

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a6960f8
:sparkles: NEW: Add Nucleus Detection Engine
shaneahmed Feb 16, 2023
6c47506
:art: DEV: Improve structure of init
shaneahmed Feb 16, 2023
c902372
Merge branch 'develop' into new-cell-detection-engine
shaneahmed Feb 16, 2023
73cfe90
Merge remote-tracking branch 'origin/develop' into new-cell-detection…
shaneahmed Feb 20, 2023
584e43a
:memo: DOC: Add documentation for mapde and sccnn
shaneahmed Feb 20, 2023
46ffdae
:boom: DEV: Fix mpp for cell detection
shaneahmed Feb 20, 2023
951ea7d
Merge remote-tracking branch 'origin/develop' into new-cell-detection…
shaneahmed Feb 20, 2023
4e2ca8b
:bug: BUG: Fix bug with loading NucleusDetector
shaneahmed Feb 21, 2023
1af8140
:bug: BUG: Fix bug with loading sccnn
shaneahmed Feb 21, 2023
527444a
:bug: BUG: Fix test bug in test_patch_predictor.py
shaneahmed Feb 21, 2023
37b82f9
:white_check_mark: TST: Add test for NucleusDetector
shaneahmed Feb 21, 2023
1405fa0
:bug: TST: Set GPU
shaneahmed Feb 21, 2023
71cb5c6
:white_check_mark: TST: Add test to improve coverage
shaneahmed Feb 22, 2023
e4625c0
Merge remote-tracking branch 'origin/develop' into new-cell-detection…
shaneahmed Feb 24, 2023
61d811a
Merge branch 'develop' into new-cell-detection-engine
shaneahmed Mar 2, 2023
4a0a940
Merge branch 'develop' into new-cell-detection-engine
shaneahmed Mar 10, 2023
a6052fc
Merge branch 'develop' into new-cell-detection-engine
shaneahmed Mar 23, 2023
6368325
Merge branch 'develop' into new-cell-detection-engine
shaneahmed Apr 7, 2023
8b67d78
Merge branch 'develop' into new-cell-detection-engine
shaneahmed May 2, 2023
b11e6f0
:memo: Add example models
shaneahmed May 2, 2023
f538289
Merge branch 'develop' into new-cell-detection-engine
shaneahmed May 5, 2023
57bde23
Merge branch 'develop' into new-cell-detection-engine
shaneahmed May 12, 2023
861532d
Merge branch 'develop' into new-cell-detection-engine
shaneahmed May 31, 2023
2c3884a
:pushpin: Pin `torch` version
shaneahmed Jun 2, 2023
e670455
:pushpin: Pin `torch` version
shaneahmed Jun 2, 2023
8d92c5e
Merge branch 'develop' into new-cell-detection-engine
shaneahmed Jun 16, 2023
7989aa7
:hammer: Try cuda 11.8
shaneahmed Jun 17, 2023
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📌 Pin torch version 
- Pin `torch` version
  • Loading branch information
@shaneahmed
shaneahmed committed Jun 2, 2023
commit 2c3884a826a9d21eafd91a40a902723b75648cdf
2 changes: 1 addition & 1 deletion requirements/requirements.txt
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Expand Up @@ -25,7 +25,7 @@ shapely>=2.0.0
SimpleITK>=2.2.1
sphinx>=5.3.0
tifffile>=2022.10.10
torch>=2.0.0
torch>=1.13.0, <2.0.0
torchvision>=0.14.1
tqdm>=4.64.1
umap-learn>=0.5.3
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