althonos / pyrodigal Star 155 Code Issues Pull requests Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! python bioinformatics genome python-library simd bioconda python-interface metagenomes cython-wrapper prodigal gene-finding orf-finder Updated Mar 26, 2025 Cython
althonos / pytrimal Star 23 Code Issues Pull requests Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD! python bioinformatics genomics python-library simd python-interface cython-wrapper multiple-sequence-alignment alignment-trimming Updated Mar 5, 2025 Cython
michelemartone / pyrsb Star 19 Code Issues Pull requests PyRSB: a Python interface to the librsb Sparse Matrix library hpc feedback numpy cython linear-algebra openmp python3 scipy python-interface sparse-linear-systems sparse-matrix librsb Updated Mar 18, 2022 Cython
althonos / pyjess Star 8 Code Issues Pull requests Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. python bioinformatics enzyme pdb protein-structure python-library python-interface cython-wrapper catalytic-site Updated Apr 9, 2025 Cython