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item_search.py
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from dateutil.tz import tzutc
from dateutil.relativedelta import relativedelta
import itertools as it
import json
import re
import logging
from collections.abc import Iterable, Mapping
from copy import deepcopy
from datetime import timezone, datetime as datetime_
from typing import Callable, Iterator, List, Optional, Tuple, Union
from urllib.error import HTTPError
import pystac
from requests import Request, Session
from pystac_client.item_collection import ItemCollection
from pystac_client.stac_api_object import STACAPIObjectMixin
from pystac_client.stac_io import get_pages, make_request, simple_stac_resolver
DATETIME_REGEX = re.compile(
r"(?P<year>\d{4})(\-(?P<month>\d{2})(\-(?P<day>\d{2})"
r"(?P<remainder>(T|t)\d{2}:\d{2}:\d{2}(\.\d+)?(Z|([-+])(\d{2}):(\d{2})))?)?)?")
DatetimeOrTimestamp = Optional[Union[datetime_, str]]
Datetime = Union[Tuple[str], Tuple[str, str]]
DatetimeLike = Union[DatetimeOrTimestamp, Tuple[DatetimeOrTimestamp, DatetimeOrTimestamp],
List[DatetimeOrTimestamp], Iterator[DatetimeOrTimestamp]]
BBox = Tuple[float, ...]
BBoxLike = Union[BBox, List[float], Iterator[float], str]
Collections = Tuple[str, ...]
CollectionsLike = Union[List[Union[str, pystac.Collection]],
Iterator[Union[str, pystac.Collection]], str, pystac.Collection]
IDs = Tuple[str, ...]
IDsLike = Union[IDs, str, List[str], Iterator[str]]
Intersects = dict
IntersectsLike = Union[str, Intersects, object]
Query = dict
QueryLike = Union[Query, List[str]]
logger = logging.getLogger(__name__)
# probably should be in a utils module
# from https://gist.github.com/angstwad/bf22d1822c38a92ec0a9#gistcomment-2622319
def dict_merge(dct, merge_dct, add_keys=True):
""" Recursive dict merge. Inspired by :meth:``dict.update()``, instead of
updating only top-level keys, dict_merge recurses down into dicts nested
to an arbitrary depth, updating keys. The ``merge_dct`` is merged into
``dct``.
This version will return a copy of the dictionary and leave the original
arguments untouched.
The optional argument ``add_keys``, determines whether keys which are
present in ``merge_dict`` but not ``dct`` should be included in the
new dict.
Args:
dct (dict) onto which the merge is executed
merge_dct (dict): dct merged into dct
add_keys (bool): whether to add new keys
Returns:
dict: updated dict
"""
dct = dct.copy()
if not add_keys:
merge_dct = {k: merge_dct[k] for k in set(dct).intersection(set(merge_dct))}
for k, v in merge_dct.items():
if (k in dct and isinstance(dct[k], dict) and isinstance(merge_dct[k], Mapping)):
dct[k] = dict_merge(dct[k], merge_dct[k], add_keys=add_keys)
else:
dct[k] = merge_dct[k]
return dct
class ItemSearch(STACAPIObjectMixin):
"""Represents a deferred query to an Item Search endpoint as described in the `STAC API - Item Search spec
<https://github.com/radiantearth/stac-api-spec/tree/master/item-search>`__. No request is sent to the API until
either the :meth:`ItemSearch.item_collections` or :meth:`ItemSearch.items` method is called and iterated over.
If ``intersects`` is included in the search parameters, then the instance will first try to make a ``POST`` request.
If server responds with a ``405 - Method Not Allowed`` status code, then the instance will fall back to using
``GET`` requests for all subsequent requests.
All "Parameters", with the exception of ``max_items``, ``method``, and ``url`` correspond to query parameters
described in the `STAC API - Item Search: Query Parameters Table
<https://github.com/radiantearth/stac-api-spec/tree/master/item-search#query-parameter-table>`__ docs. Please refer
to those docs for details on how these parameters filter search results.
"Other Parameters" are other keyword arguments specific to this library's implementation and do not correspond to
concepts in the STAC API spec.
Parameters
----------
url : str
The URL to the item-search endpoint
method : str or None, optional
The HTTP method to use when making a request to the service. This must be either ``"GET"``, ``"POST"``, or
``None``. If ``None``, this will default to ``"POST"`` if the ``intersects`` argument is present and ``"GET"``
if not. If a ``"POST"`` request receives a ``405`` status for the response, it will automatically retry with a
``"GET"`` request for all subsequent requests.
max_items : int or None, optional
The maximum number of items to return from the search. *Note that this is not a STAC API - Item Search parameter
and is instead used by the client to limit the total number of returned items*.
limit : int, optional
The maximum number of items to return *per page*. Defaults to ``None``, which falls back to the limit set by the
service.
bbox: list or tuple or Iterator or str, optional
May be a list, tuple, or iterator representing a bounding box of 2D or 3D coordinates. Results will be filtered
to only those intersecting the bounding box.
datetime: str or datetime.datetime or list or tuple or Iterator, optional
Either a single datetime or datetime range used to filter results. You may express a single datetime using a
:class:`datetime.datetime` instance, a `RFC 3339-compliant <https://tools.ietf.org/html/rfc3339>`__ timestamp,
or a simple date string (see below). Instances of :class:`datetime.datetime` may be either timezone aware or
unaware. Timezone aware instances will be converted to a UTC timestamp before being passed to the endpoint.
Timezone unaware instances are assumed to represent UTC timestamps. You may represent a datetime range using a
``"/"`` separated string as described in the spec, or a list, tuple, or iterator of 2 timestamps or datetime
instances. For open-ended ranges, use either ``".."`` (``'2020-01-01:00:00:00Z/..'``,
``['2020-01-01:00:00:00Z', '..']``) or a value of ``None`` (``['2020-01-01:00:00:00Z', None]``).
If using a simple date string, the datetime can be specified in ``YYYY-mm-dd`` format, optionally truncating
to ``YYYY-mm`` or just ``YYYY``. Simple date strings will be expanded to include the entire time period, for
example:
- ``2017`` expands to ``2017-01-01T00:00:00Z/2017-12-31T23:59:59Z``
- ``2017-06`` expands to ``2017-06-01T00:00:00Z/2017-06-30T23:59:59Z``
- ``2017-06-10`` expands to ``2017-06-10T00:00:00Z/2017-06-10T23:59:59Z``
If used in a range, the end of the range expands to the end of that day/month/year, for example:
- ``2017/2018`` expands to ``2017-01-01T00:00:00Z/2018-12-31T23:59:59Z``
- ``2017-06/2017-07`` expands to ``2017-06-01T00:00:00Z/2017-07-31T23:59:59Z``
- ``2017-06-10/2017-06-11`` expands to ``2017-06-10T00:00:00Z/2017-06-11T23:59:59Z``
intersects: str or dict, optional
A GeoJSON-like dictionary or JSON string. Results will be filtered to only those intersecting the geometry
ids: list, optional
List of Item ids to return. All other filter parameters that further restrict the number of search results
(except ``limit``) are ignored.
collections: list, optional
List of one or more Collection IDs or :class:`pystac.Collection` instances. Only Items in one of the provided
Collections will be searched
Other Parameters
----------------
next_resolver : Callable, optional
A callable that will be used to construct the next request based on a "next" link and the previous request.
Defaults to using the :func:`~pystac_client.stac_io.simple_stac_resolver`.
conformance : list, optional
A list of conformance URIs indicating the specs that this service conforms to. Note that these are *not*
published as part of the ``"search"`` endpoint and must be obtained from the service's landing page.
"""
def __init__(
self,
url: str,
*,
limit: Optional[int] = None,
bbox: Optional[BBoxLike] = None,
datetime: Optional[DatetimeLike] = None,
intersects: Optional[IntersectsLike] = None,
ids: Optional[IDsLike] = None,
collections: Optional[CollectionsLike] = None,
query: Optional[QueryLike] = None,
max_items: Optional[int] = None,
method: Optional[str] = 'POST',
headers: Optional[dict] = {},
conformance: List[str] = [],
next_resolver: Callable = None,
):
self.conformance = conformance
self.session = Session()
self.session.headers.update(headers or {})
self.request = Request(method=method, url=url)
self._next_resolver = next_resolver or simple_stac_resolver
self._max_items = max_items
params = {
'limit': int(limit) if limit is not None else None,
'bbox': self._format_bbox(bbox),
'datetime': self._format_datetime(datetime),
'ids': self._format_ids(ids),
'collections': self._format_collections(collections),
'intersects': self._format_intersects(intersects),
'query': self._format_query(query)
}
self._search_parameters = {k: v for k, v in params.items() if v is not None}
if method == 'POST':
self.request.json = self._search_parameters
else:
self.request.params = self._search_parameters
@property
def url(self):
"""The base URL to which search requests will be made. This may include query string parameters, but any
parameters that overlap with initialization arguments will be overwritten."""
return str(self.request.url)
@property
def method(self):
"""The HTTP method/verb that will be used when making requests."""
return str(self.request.method)
@staticmethod
def _format_query(value: List[QueryLike]) -> Optional[dict]:
if value is None:
return None
OP_MAP = {'>=': 'gte', '<=': 'lte', '=': 'eq', '>': 'gt', '<': 'lt'}
if isinstance(value, list):
query = {}
for q in value:
for op in ['>=', '<=', '=', '>', '<']:
parts = q.split(op)
if len(parts) == 2:
query = dict_merge(query, {parts[0]: {OP_MAP[op]: parts[1]}})
break
else:
query = value
return query
@staticmethod
def _format_bbox(value: Optional[BBoxLike]) -> Optional[BBox]:
if value is None:
return None
if isinstance(value, str):
bbox = tuple(map(float, value.split(',')))
else:
bbox = tuple(map(float, value))
return bbox
@staticmethod
def _format_datetime(value: Optional[DatetimeLike]) -> Optional[Datetime]:
def _to_utc_isoformat(dt):
dt = dt.astimezone(timezone.utc)
dt = dt.replace(tzinfo=None)
return dt.isoformat("T") + "Z"
def _to_isoformat_range(component: DatetimeOrTimestamp):
"""Converts a single DatetimeOrTimestamp into one or two Datetimes.
This is required to expand a single value like "2017" out to the whole year. This function returns two values.
The first value is always a valid Datetime. The second value can be None or a Datetime. If it is None, this
means that the first value was an exactly specified value (e.g. a `datetime.datetime`). If the second value is
a Datetime, then it will be the end of the range at the resolution of the component, e.g. if the component
were "2017" the second value would be the last second of the last day of 2017.
"""
if component is None:
return "..", None
elif isinstance(component, str):
if component == "..":
return component, None
match = DATETIME_REGEX.match(component)
if not match:
raise Exception(f"invalid datetime component: {component}")
elif match.group("remainder"):
return component, None
else:
year = int(match.group("year"))
optional_month = match.group("month")
optional_day = match.group("day")
if optional_day is not None:
start = datetime_(year,
int(optional_month),
int(optional_day),
0,
0,
0,
tzinfo=tzutc())
end = start + relativedelta(days=1, seconds=-1)
elif optional_month is not None:
start = datetime_(year, int(optional_month), 1, 0, 0, 0, tzinfo=tzutc())
end = start + relativedelta(months=1, seconds=-1)
else:
start = datetime_(year, 1, 1, 0, 0, 0, tzinfo=tzutc())
end = start + relativedelta(years=1, seconds=-1)
return _to_utc_isoformat(start), _to_utc_isoformat(end)
else:
return _to_utc_isoformat(component), None
if value is None:
return None
elif isinstance(value, datetime_):
return _to_utc_isoformat(value)
elif isinstance(value, str):
components = value.split("/")
else:
components = list(value)
if not components:
return None
elif len(components) == 1:
start, end = _to_isoformat_range(components[0])
if end is not None:
return f"{start}/{end}"
else:
return start
elif len(components) == 2:
start, _ = _to_isoformat_range(components[0])
backup_end, end = _to_isoformat_range(components[1])
return f"{start}/{end or backup_end}"
else:
raise Exception(
f"too many datetime components (max=2, actual={len(components)}): {value}")
@staticmethod
def _format_collections(value: Optional[CollectionsLike]) -> Optional[Collections]:
def _format(c):
if isinstance(c, str):
return c
if isinstance(c, Iterable):
return tuple(map(_format, c))
return c.id
if value is None:
return None
if isinstance(value, str):
return tuple(map(_format, value.split(',')))
if isinstance(value, pystac.Collection):
return _format(value),
return _format(value)
@staticmethod
def _format_ids(value: Optional[IDsLike]) -> Optional[IDs]:
if value is None:
return None
if isinstance(value, str):
return tuple(value.split(','))
return tuple(value)
@staticmethod
def _format_intersects(value: Optional[IntersectsLike]) -> Optional[Intersects]:
if value is None:
return None
if isinstance(value, str):
return json.loads(value)
return deepcopy(getattr(value, '__geo_interface__', value))
def matched(self) -> int:
resp = make_request(self.session, self.request, {"limit": 0})
found = None
if 'context' in resp:
found = resp['context']['matched']
elif 'numberMatched' in resp:
found = resp['numberMatched']
if found is None:
logger.warning("numberMatched or context.matched not in response")
return found
def item_collections(self) -> Iterator[ItemCollection]:
"""Iterator that yields dictionaries matching the `ItemCollection
<https://github.com/radiantearth/stac-api-spec/blob/master/fragments/itemcollection/README.md>`__ spec. Each of
these items represents a "page" or results for the search.
Yields
-------
item_collection : pystac_client.ItemCollection
"""
request = deepcopy(self.request)
for page in get_pages(session=self.session,
request=request,
next_resolver=self._next_resolver):
yield ItemCollection.from_dict(page, conformance=self.conformance)
def items(self) -> Iterator[pystac.Item]:
"""Iterator that yields :class:`pystac.Item` instances for each item matching the given search parameters. Calls
:meth:`ItemSearch.item_collections()` internally and yields from
:attr:`ItemCollection.features <pystac_client.ItemCollection.features>` for each page of results.
Yields
------
item : pystac.Item
"""
def _paginate():
for item_collection in self.item_collections():
yield from item_collection.features
try:
yield from it.islice(_paginate(), self._max_items)
except HTTPError as e:
if e.code == 405:
self._method = 'GET'
yield from it.islice(_paginate(), self._max_items)
else:
raise
def items_as_collection(self) -> ItemCollection:
"""Convenience method that builds an :class:`ItemCollection` from all items matching the given search parameters.
Returns
------
item_collection : ItemCollection
"""
return ItemCollection(self.items())