Merge branch 'develop' of https://github.com/TissueImageAnalytics/tiatoolbox into sam-architecture

Author: mbasheer04

.github/workflows/python-package.yml

@@ -30,7 +30,7 @@ jobs:
         sudo apt update
         sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
         python -m pip install --upgrade pip
-        python -m pip install ruff==0.7.0 pytest pytest-cov pytest-runner
+        python -m pip install ruff==0.7.4 pytest pytest-cov pytest-runner
         pip install -r requirements/requirements.txt
     - name: Cache tiatoolbox static assets
       uses: actions/cache@v3
@@ -58,7 +58,7 @@ jobs:
     - name: Test with pytest
       run: |
         pytest --basetemp={envtmpdir} \
-           --cov=tiatoolbox --cov-report=term --cov-report=xml \
+           --cov=tiatoolbox --cov-report=term --cov-report=xml --cov-config=pyproject.toml \
            --capture=sys \
            --durations=10 --durations-min=1.0 \
            --maxfail=1

.pre-commit-config.yaml

@@ -60,7 +60,7 @@ repos:
       - id: rst-inline-touching-normal # Detect mistake of inline code touching normal text in rst.
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.7.0
+    rev: v0.7.4
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]