Skip to content

Commit 242aee6

Browse files
mesnardomesnardo
committed
Update changelog; bump version; run autogen
Bump version to 0.3.1.
1 parent 3b1fe76 commit 242aee6

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

44 files changed

+4816
-7569
lines changed

‎CHANGELOG.md

+27
Original file line numberDiff line numberDiff line change
@@ -2,6 +2,33 @@
22

33
---
44

5+
## 0.3.1
6+
7+
---
8+
9+
JOSS revision.
10+
11+
### Added
12+
13+
* Add section in README and documentation on how to use the API.
14+
* Add simple Navier-Stokes solver using the PetIBM API in the folder `examples/api_examples`.
15+
16+
### Changed
17+
18+
* Rename application code `tairacolonius` into `ibpm` (Immersed Boundary Projection Method); binary program now named `petibm-ibpm`.
19+
* Make YAML converters and operator< private.
20+
* Move example of oscillating cylinder to folder `examples/api_examples`.
21+
* Update optional dependency `AmgXWrapper` with latest version (1.4).
22+
23+
### Fixed
24+
25+
* Remove MPI barrier in routine that creates a directory.
26+
* Fixed memory leaks in solver programs and utility programs.
27+
28+
### Removed
29+
30+
---
31+
532
## 0.3.0
633

734
---

‎Makefile.in

+9-9
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
1-
# Makefile.in generated by automake 1.15.1 from Makefile.am.
1+
# Makefile.in generated by automake 1.15 from Makefile.am.
22
# @configure_input@
33

4-
# Copyright (C) 1994-2017 Free Software Foundation, Inc.
4+
# Copyright (C) 1994-2014 Free Software Foundation, Inc.
55

66
# This Makefile.in is free software; the Free Software Foundation
77
# gives unlimited permission to copy and/or distribute it,
@@ -173,8 +173,8 @@ am__DIST_COMMON = $(srcdir)/Makefile.in $(top_srcdir)/config/compile \
173173
$(top_srcdir)/config/config.sub \
174174
$(top_srcdir)/config/install-sh $(top_srcdir)/config/ltmain.sh \
175175
$(top_srcdir)/config/missing config/ar-lib config/compile \
176-
config/config.guess config/config.sub config/install-sh \
177-
config/ltmain.sh config/missing
176+
config/config.guess config/config.sub config/depcomp \
177+
config/install-sh config/ltmain.sh config/missing
178178
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
179179
distdir = $(PACKAGE)-$(VERSION)
180180
top_distdir = $(distdir)
@@ -273,7 +273,6 @@ LIBTOOL = @LIBTOOL@
273273
LIPO = @LIPO@
274274
LN_S = @LN_S@
275275
LTLIBOBJS = @LTLIBOBJS@
276-
LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
277276
MAINT = @MAINT@
278277
MAKEINFO = @MAKEINFO@
279278
MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -349,6 +348,7 @@ pdfdir = @pdfdir@
349348
prefix = @prefix@
350349
program_transform_name = @program_transform_name@
351350
psdir = @psdir@
351+
runstatedir = @runstatedir@
352352
sbindir = @sbindir@
353353
sharedstatedir = @sharedstatedir@
354354
srcdir = @srcdir@
@@ -599,7 +599,7 @@ distdir: $(DISTFILES)
599599
! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
600600
|| chmod -R a+r "$(distdir)"
601601
dist-gzip: distdir
602-
tardir=$(distdir) && $(am__tar) | eval GZIP= gzip $(GZIP_ENV) -c >$(distdir).tar.gz
602+
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
603603
$(am__post_remove_distdir)
604604

605605
dist-bzip2: distdir
@@ -625,7 +625,7 @@ dist-shar: distdir
625625
@echo WARNING: "Support for shar distribution archives is" \
626626
"deprecated." >&2
627627
@echo WARNING: "It will be removed altogether in Automake 2.0" >&2
628-
shar $(distdir) | eval GZIP= gzip $(GZIP_ENV) -c >$(distdir).shar.gz
628+
shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
629629
$(am__post_remove_distdir)
630630

631631
dist-zip: distdir
@@ -643,7 +643,7 @@ dist dist-all:
643643
distcheck: dist
644644
case '$(DIST_ARCHIVES)' in \
645645
*.tar.gz*) \
646-
eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).tar.gz | $(am__untar) ;;\
646+
GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
647647
*.tar.bz2*) \
648648
bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
649649
*.tar.lz*) \
@@ -653,7 +653,7 @@ distcheck: dist
653653
*.tar.Z*) \
654654
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
655655
*.shar.gz*) \
656-
eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).shar.gz | unshar ;;\
656+
GZIP=$(GZIP_ENV) gzip -dc $(distdir).shar.gz | unshar ;;\
657657
*.zip*) \
658658
unzip $(distdir).zip ;;\
659659
esac

‎aclocal.m4

+23-23
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
1-
# generated automatically by aclocal 1.15.1 -*- Autoconf -*-
1+
# generated automatically by aclocal 1.15 -*- Autoconf -*-
22

3-
# Copyright (C) 1996-2017 Free Software Foundation, Inc.
3+
# Copyright (C) 1996-2014 Free Software Foundation, Inc.
44

55
# This file is free software; the Free Software Foundation
66
# gives unlimited permission to copy and/or distribute it,
@@ -20,7 +20,7 @@ You have another version of autoconf. It may work, but is not guaranteed to.
2020
If you have problems, you may need to regenerate the build system entirely.
2121
To do so, use the procedure documented by the package, typically 'autoreconf'.])])
2222

23-
# Copyright (C) 2002-2017 Free Software Foundation, Inc.
23+
# Copyright (C) 2002-2014 Free Software Foundation, Inc.
2424
#
2525
# This file is free software; the Free Software Foundation
2626
# gives unlimited permission to copy and/or distribute it,
@@ -35,7 +35,7 @@ AC_DEFUN([AM_AUTOMAKE_VERSION],
3535
[am__api_version='1.15'
3636
dnl Some users find AM_AUTOMAKE_VERSION and mistake it for a way to
3737
dnl require some minimum version. Point them to the right macro.
38-
m4_if([$1], [1.15.1], [],
38+
m4_if([$1], [1.15], [],
3939
[AC_FATAL([Do not call $0, use AM_INIT_AUTOMAKE([$1]).])])dnl
4040
])
4141

@@ -51,14 +51,14 @@ m4_define([_AM_AUTOCONF_VERSION], [])
5151
# Call AM_AUTOMAKE_VERSION and AM_AUTOMAKE_VERSION so they can be traced.
5252
# This function is AC_REQUIREd by AM_INIT_AUTOMAKE.
5353
AC_DEFUN([AM_SET_CURRENT_AUTOMAKE_VERSION],
54-
[AM_AUTOMAKE_VERSION([1.15.1])dnl
54+
[AM_AUTOMAKE_VERSION([1.15])dnl
5555
m4_ifndef([AC_AUTOCONF_VERSION],
5656
[m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl
5757
_AM_AUTOCONF_VERSION(m4_defn([AC_AUTOCONF_VERSION]))])
5858

5959
# AM_AUX_DIR_EXPAND -*- Autoconf -*-
6060

61-
# Copyright (C) 2001-2017 Free Software Foundation, Inc.
61+
# Copyright (C) 2001-2014 Free Software Foundation, Inc.
6262
#
6363
# This file is free software; the Free Software Foundation
6464
# gives unlimited permission to copy and/or distribute it,
@@ -110,7 +110,7 @@ am_aux_dir=`cd "$ac_aux_dir" && pwd`
110110

111111
# AM_CONDITIONAL -*- Autoconf -*-
112112

113-
# Copyright (C) 1997-2017 Free Software Foundation, Inc.
113+
# Copyright (C) 1997-2014 Free Software Foundation, Inc.
114114
#
115115
# This file is free software; the Free Software Foundation
116116
# gives unlimited permission to copy and/or distribute it,
@@ -141,7 +141,7 @@ AC_CONFIG_COMMANDS_PRE(
141141
Usually this means the macro was only invoked conditionally.]])
142142
fi])])
143143

144-
# Copyright (C) 1999-2017 Free Software Foundation, Inc.
144+
# Copyright (C) 1999-2014 Free Software Foundation, Inc.
145145
#
146146
# This file is free software; the Free Software Foundation
147147
# gives unlimited permission to copy and/or distribute it,
@@ -332,7 +332,7 @@ _AM_SUBST_NOTMAKE([am__nodep])dnl
332332

333333
# Generate code to set up dependency tracking. -*- Autoconf -*-
334334

335-
# Copyright (C) 1999-2017 Free Software Foundation, Inc.
335+
# Copyright (C) 1999-2014 Free Software Foundation, Inc.
336336
#
337337
# This file is free software; the Free Software Foundation
338338
# gives unlimited permission to copy and/or distribute it,
@@ -408,7 +408,7 @@ AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
408408

409409
# Do all the work for Automake. -*- Autoconf -*-
410410

411-
# Copyright (C) 1996-2017 Free Software Foundation, Inc.
411+
# Copyright (C) 1996-2014 Free Software Foundation, Inc.
412412
#
413413
# This file is free software; the Free Software Foundation
414414
# gives unlimited permission to copy and/or distribute it,
@@ -605,7 +605,7 @@ for _am_header in $config_headers :; do
605605
done
606606
echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
607607

608-
# Copyright (C) 2001-2017 Free Software Foundation, Inc.
608+
# Copyright (C) 2001-2014 Free Software Foundation, Inc.
609609
#
610610
# This file is free software; the Free Software Foundation
611611
# gives unlimited permission to copy and/or distribute it,
@@ -626,7 +626,7 @@ if test x"${install_sh+set}" != xset; then
626626
fi
627627
AC_SUBST([install_sh])])
628628

629-
# Copyright (C) 2003-2017 Free Software Foundation, Inc.
629+
# Copyright (C) 2003-2014 Free Software Foundation, Inc.
630630
#
631631
# This file is free software; the Free Software Foundation
632632
# gives unlimited permission to copy and/or distribute it,
@@ -648,7 +648,7 @@ AC_SUBST([am__leading_dot])])
648648
# Add --enable-maintainer-mode option to configure. -*- Autoconf -*-
649649
# From Jim Meyering
650650

651-
# Copyright (C) 1996-2017 Free Software Foundation, Inc.
651+
# Copyright (C) 1996-2014 Free Software Foundation, Inc.
652652
#
653653
# This file is free software; the Free Software Foundation
654654
# gives unlimited permission to copy and/or distribute it,
@@ -683,7 +683,7 @@ AC_MSG_CHECKING([whether to enable maintainer-specific portions of Makefiles])
683683

684684
# Check to see how 'make' treats includes. -*- Autoconf -*-
685685

686-
# Copyright (C) 2001-2017 Free Software Foundation, Inc.
686+
# Copyright (C) 2001-2014 Free Software Foundation, Inc.
687687
#
688688
# This file is free software; the Free Software Foundation
689689
# gives unlimited permission to copy and/or distribute it,
@@ -733,7 +733,7 @@ rm -f confinc confmf
733733

734734
# Fake the existence of programs that GNU maintainers use. -*- Autoconf -*-
735735

736-
# Copyright (C) 1997-2017 Free Software Foundation, Inc.
736+
# Copyright (C) 1997-2014 Free Software Foundation, Inc.
737737
#
738738
# This file is free software; the Free Software Foundation
739739
# gives unlimited permission to copy and/or distribute it,
@@ -772,7 +772,7 @@ fi
772772

773773
# Helper functions for option handling. -*- Autoconf -*-
774774

775-
# Copyright (C) 2001-2017 Free Software Foundation, Inc.
775+
# Copyright (C) 2001-2014 Free Software Foundation, Inc.
776776
#
777777
# This file is free software; the Free Software Foundation
778778
# gives unlimited permission to copy and/or distribute it,
@@ -801,7 +801,7 @@ AC_DEFUN([_AM_SET_OPTIONS],
801801
AC_DEFUN([_AM_IF_OPTION],
802802
[m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])])
803803

804-
# Copyright (C) 1999-2017 Free Software Foundation, Inc.
804+
# Copyright (C) 1999-2014 Free Software Foundation, Inc.
805805
#
806806
# This file is free software; the Free Software Foundation
807807
# gives unlimited permission to copy and/or distribute it,
@@ -848,7 +848,7 @@ AC_LANG_POP([C])])
848848
# For backward compatibility.
849849
AC_DEFUN_ONCE([AM_PROG_CC_C_O], [AC_REQUIRE([AC_PROG_CC])])
850850

851-
# Copyright (C) 2001-2017 Free Software Foundation, Inc.
851+
# Copyright (C) 2001-2014 Free Software Foundation, Inc.
852852
#
853853
# This file is free software; the Free Software Foundation
854854
# gives unlimited permission to copy and/or distribute it,
@@ -867,7 +867,7 @@ AC_DEFUN([AM_RUN_LOG],
867867

868868
# Check to make sure that the build environment is sane. -*- Autoconf -*-
869869

870-
# Copyright (C) 1996-2017 Free Software Foundation, Inc.
870+
# Copyright (C) 1996-2014 Free Software Foundation, Inc.
871871
#
872872
# This file is free software; the Free Software Foundation
873873
# gives unlimited permission to copy and/or distribute it,
@@ -948,7 +948,7 @@ AC_CONFIG_COMMANDS_PRE(
948948
rm -f conftest.file
949949
])
950950

951-
# Copyright (C) 2009-2017 Free Software Foundation, Inc.
951+
# Copyright (C) 2009-2014 Free Software Foundation, Inc.
952952
#
953953
# This file is free software; the Free Software Foundation
954954
# gives unlimited permission to copy and/or distribute it,
@@ -1008,7 +1008,7 @@ AC_SUBST([AM_BACKSLASH])dnl
10081008
_AM_SUBST_NOTMAKE([AM_BACKSLASH])dnl
10091009
])
10101010

1011-
# Copyright (C) 2001-2017 Free Software Foundation, Inc.
1011+
# Copyright (C) 2001-2014 Free Software Foundation, Inc.
10121012
#
10131013
# This file is free software; the Free Software Foundation
10141014
# gives unlimited permission to copy and/or distribute it,
@@ -1036,7 +1036,7 @@ fi
10361036
INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s"
10371037
AC_SUBST([INSTALL_STRIP_PROGRAM])])
10381038

1039-
# Copyright (C) 2006-2017 Free Software Foundation, Inc.
1039+
# Copyright (C) 2006-2014 Free Software Foundation, Inc.
10401040
#
10411041
# This file is free software; the Free Software Foundation
10421042
# gives unlimited permission to copy and/or distribute it,
@@ -1055,7 +1055,7 @@ AC_DEFUN([AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE($@)])
10551055

10561056
# Check how to create a tarball. -*- Autoconf -*-
10571057

1058-
# Copyright (C) 2004-2017 Free Software Foundation, Inc.
1058+
# Copyright (C) 2004-2014 Free Software Foundation, Inc.
10591059
#
10601060
# This file is free software; the Free Software Foundation
10611061
# gives unlimited permission to copy and/or distribute it,

‎applications/Makefile.in

+3-3
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
1-
# Makefile.in generated by automake 1.15.1 from Makefile.am.
1+
# Makefile.in generated by automake 1.15 from Makefile.am.
22
# @configure_input@
33

4-
# Copyright (C) 1994-2017 Free Software Foundation, Inc.
4+
# Copyright (C) 1994-2014 Free Software Foundation, Inc.
55

66
# This Makefile.in is free software; the Free Software Foundation
77
# gives unlimited permission to copy and/or distribute it,
@@ -246,7 +246,6 @@ LIBTOOL = @LIBTOOL@
246246
LIPO = @LIPO@
247247
LN_S = @LN_S@
248248
LTLIBOBJS = @LTLIBOBJS@
249-
LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
250249
MAINT = @MAINT@
251250
MAKEINFO = @MAKEINFO@
252251
MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -322,6 +321,7 @@ pdfdir = @pdfdir@
322321
prefix = @prefix@
323322
program_transform_name = @program_transform_name@
324323
psdir = @psdir@
324+
runstatedir = @runstatedir@
325325
sbindir = @sbindir@
326326
sharedstatedir = @sharedstatedir@
327327
srcdir = @srcdir@

‎applications/createxdmf/Makefile.in

+3-3
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
1-
# Makefile.in generated by automake 1.15.1 from Makefile.am.
1+
# Makefile.in generated by automake 1.15 from Makefile.am.
22
# @configure_input@
33

4-
# Copyright (C) 1994-2017 Free Software Foundation, Inc.
4+
# Copyright (C) 1994-2014 Free Software Foundation, Inc.
55

66
# This Makefile.in is free software; the Free Software Foundation
77
# gives unlimited permission to copy and/or distribute it,
@@ -240,7 +240,6 @@ LIBTOOL = @LIBTOOL@
240240
LIPO = @LIPO@
241241
LN_S = @LN_S@
242242
LTLIBOBJS = @LTLIBOBJS@
243-
LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
244243
MAINT = @MAINT@
245244
MAKEINFO = @MAKEINFO@
246245
MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -316,6 +315,7 @@ pdfdir = @pdfdir@
316315
prefix = @prefix@
317316
program_transform_name = @program_transform_name@
318317
psdir = @psdir@
318+
runstatedir = @runstatedir@
319319
sbindir = @sbindir@
320320
sharedstatedir = @sharedstatedir@
321321
srcdir = @srcdir@

‎applications/decoupledibpm/Makefile.in

+3-3
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
1-
# Makefile.in generated by automake 1.15.1 from Makefile.am.
1+
# Makefile.in generated by automake 1.15 from Makefile.am.
22
# @configure_input@
33

4-
# Copyright (C) 1994-2017 Free Software Foundation, Inc.
4+
# Copyright (C) 1994-2014 Free Software Foundation, Inc.
55

66
# This Makefile.in is free software; the Free Software Foundation
77
# gives unlimited permission to copy and/or distribute it,
@@ -241,7 +241,6 @@ LIBTOOL = @LIBTOOL@
241241
LIPO = @LIPO@
242242
LN_S = @LN_S@
243243
LTLIBOBJS = @LTLIBOBJS@
244-
LT_SYS_LIBRARY_PATH = @LT_SYS_LIBRARY_PATH@
245244
MAINT = @MAINT@
246245
MAKEINFO = @MAKEINFO@
247246
MANIFEST_TOOL = @MANIFEST_TOOL@
@@ -317,6 +316,7 @@ pdfdir = @pdfdir@
317316
prefix = @prefix@
318317
program_transform_name = @program_transform_name@
319318
psdir = @psdir@
319+
runstatedir = @runstatedir@
320320
sbindir = @sbindir@
321321
sharedstatedir = @sharedstatedir@
322322
srcdir = @srcdir@

0 commit comments

Comments
 (0)