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[ADD] improve output, store orthoxml stub files in debug mode

alpaepushed 3 commits to dev • c7df295…af91dfb • 
10 days ago

[FIX] counting amino acid residues properly

alpaepushed 1 commit to dev • a538b50…c7df295 • 
on Mar 11

log pickle errors during collection and indicate broken file name

alpaepushed 2 commits to dev • 5b46937…a538b50 • 
on Mar 11

replacing easy-cluster with easy-linclust

sinamajidianpushed 1 commit to dev • e0ae151…5b46937 • 
on Feb 16

increase process_single's memory to 14GB, tailored to omamer, avoidin…

sinamajidianpushed 1 commit to dev • 06beea7…e0ae151 • 
on Feb 16

deactivating auto in mafft to mitigate randomness

sinamajidianpushed 1 commit to dev • 3bec89a…06beea7 • 
on Feb 16

temporarily removing --min-sequence-length to be consistent with the …

sinamajidianpushed 1 commit to main • ced7941…7997293 • 
on Feb 16

Merge pull request #60 from ali-yz/fix/og-bug

Pull request merge
sinamajidianpushed 2 commits to dev • ad519b1…3bec89a • 
on Feb 15

Merge pull request #24 from ens-sb/main add file conf/base_large.config

Pull request merge
sinamajidianpushed 2 commits to dev • 6d29bb3…ad519b1 • 
on Feb 15

Merge pull request #33 from DessimozLab/orthoXML-splitter-update

Pull request merge
sinamajidianpushed 2 commits to dev • 30f9698…6d29bb3 • 
on Feb 15

commenting replicate function to avoid confusion

sinamajidianpushed 1 commit to dev • a9a46ab…30f9698 • 
on Feb 15

improve logging functionality

alpaepushed 1 commit to dev • cfa8767…a9a46ab • 
on Feb 7

use IUPAC chars for dna/rna/protein count check (issue #56)

alpaepushed 1 commit to dev • 9da900d…cfa8767 • 
on Feb 6

attempt to fix issue #55

alpaepushed 1 commit to dev • bdf1f20…9da900d • 
on Feb 6

Add files via upload

sinamajidianpushed 1 commit to dev • 3612222…bdf1f20 • 
on Feb 5

Update README.md

sinamajidianpushed 1 commit to main • 4b41959…ced7941 • 
on Feb 4

Error when input are genomic via >90% atcgATCG in seq #56

sinamajidianpushed 1 commit to dev • 23f160f…3612222 • 
on Feb 4

Update README.md

natashagloverpushed 1 commit to main • 5c4c14e…4b41959 • 
on Jan 29

Bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.4

dependabot[bot]created dependabot/github_actions/pypa/gh-action-pypi-publish-1.12.4 • 65d7c45 • 
on Jan 27

Update README.md conda create

sinamajidianpushed 1 commit to main • 4a9a18e…5c4c14e • 
on Jan 21

Update README.md

sinamajidianpushed 1 commit to dev • 6e7e312…23f160f • 
on Jan 18

Add files via upload

sinamajidianpushed 1 commit to dev • e38196a…6e7e312 • 
on Jan 11

Update README.md

sinamajidianpushed 1 commit to main • 83bfac0…4a9a18e • 
on Dec 25, 2024

add logo

sinamajidianpushed 1 commit to main • 555a986…83bfac0 • 
on Dec 25, 2024

Bump pypa/gh-action-pypi-publish from 1.12.2 to 1.12.3

dependabot[bot]created dependabot/github_actions/pypa/gh-action-pypi-publish-1.12.3 • bbb93c9 • 
on Dec 10, 2024

fix fastoma academy link

sinamajidianpushed 1 commit to main • b54f6fc…555a986 • 
on Dec 6, 2024

correcting the stats of genes in the group

sinamajidianpushed 1 commit to dev • 85bc126…e38196a • 
on Nov 21, 2024

add min_sequence_length=50, otherwise minor_splice values are not corret

sinamajidianpushed 1 commit to dev • 9aebb6a…85bc126 • 
on Nov 21, 2024

fix warnings from Docker about legacy style format

alpaepushed 1 commit to dev • 3141113…9aebb6a • 
on Nov 18, 2024