Skip to main content

Characterizing ResNet Filters to Identify Positive and Negative Findings in Breast MRI Sequences

  • Conference paper
  • First Online:
Applied Computer Sciences in Engineering (WEA 2020)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 1274))

Included in the following conference series:

  • 1088 Accesses

Abstract

Training of deep learning models requires large and properly labeled datasets, which make unfeasible using it for developing computer-aided diagnosis systems in medical imaging. As an alternative, transfer learning has shown to be useful to extract deep features using architectures previously trained. In this paper, a new method for classification of breast lesions in magnetic resonance imaging is proposed, which uses the pre-trained ResNet-50 architecture for extracting a set of image features that are then used by an SVM model for differentiating between positive and negative findings. We take advantage of the ResNet-50 architecture for introducing volumetric lesion information by including three consecutive slices per lesion. Filters used as feature descriptors were selected using a multiple kernel learning method, which allows identifying those filters that provide the most relevant information for the classification task. Additionally, instead of using raw filters as features, we propose to characterize it using statistical moments, which improves the classification performance. The evaluation was conducted using a set of 146 ROIs extracted from three sequences proposed for designing abbreviated breast MRI protocols (DCE, ADC, and T2-Vista). Positive findings were identified with an AUC of 82.4 using a DCE image, and 81.08 fusing features from the three sequences.

This work was supported by MINCIENCIAS, Instituto Tecnológico Metropolitano and Ayudas Diagnósticas Sura (RC740-2017 Project).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Antropova, N., Huynh, B., Giger, M.: SU-D-207B-06: predicting breast cancer malignancy on DCE-MRI data using pre-trained convolutional neural networks. Med. Phys. 43(6, Pt. 4), 3349–3350 (2016)

    Google Scholar 

  2. Antropova, N., Abe, H., Giger, M.L.: Use of clinical MRI maximum intensity projections for improved breast lesion classification with deep convolutional neural networks. J. Med. Imaging 5(1), 014503 (2018)

    Article  Google Scholar 

  3. Areiza-Laverde, H.J., Castro-Ospina, A.E., Hernández, M.L., Díaz, G.M.: A novel method for objective selection of information sources using multi-kernel SVM and local scaling. Sensors 20(14), 3919 (2020)

    Article  Google Scholar 

  4. Areiza-Laverde, H.J., Díaz, G.M., Castro-Ospina, A.E.: Feature group selection using MKL penalized with \(\ell _1\)-norm and SVM as base learner. In: Figueroa-García, J.C., López-Santana, E.R., Rodriguez-Molano, J.I. (eds.) WEA 2018. CCIS, vol. 915, pp. 136–147. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00350-0_12

    Chapter  Google Scholar 

  5. Canziani, A., Paszke, A., Culurciello, E.: An analysis of deep neural network models for practical applications. arXiv preprint arXiv:1605.07678 (2016)

  6. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  7. Hu, Q., Whitney, H.M., Edwards, A., Papaioannou, J., Giger, M.L.: Radiomics and deep learning of diffusion-weighted MRI in the diagnosis of breast cancer. In: Medical Imaging 2019: Computer-Aided Diagnosis, vol. 10950, p. 109504A. International Society for Optics and Photonics (2019)

    Google Scholar 

  8. Leithner, D., Moy, L., Morris, E.A., Marino, M.A., Helbich, T.H., Pinker, K.: Abbreviated MRI of the breast: does it provide value? J. Magn. Reson. Imaging (2018)

    Google Scholar 

  9. Marrone, S., Piantadosi, G., Fusco, R., Petrillo, A., Sansone, M., Sansone, C.: An investigation of deep learning for lesions malignancy classification in breast DCE-MRI. In: Battiato, S., Gallo, G., Schettini, R., Stanco, F. (eds.) ICIAP 2017. LNCS, vol. 10485, pp. 479–489. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-68548-9_44

    Chapter  Google Scholar 

  10. Murtaza, G., et al.: Deep learning-based breast cancer classification through medical imaging modalities: state of the art and research challenges. Artif. Intell. Rev. 53(3), 1655–1720 (2019). https://doi.org/10.1007/s10462-019-09716-5

    Article  Google Scholar 

  11. Narváez, F., Díaz, G., Poveda, C., Romero, E.: An automatic BI-RADS description of mammographic masses by fusing multiresolution features. Expert Syst. Appl. 74, 82–95 (2017)

    Article  Google Scholar 

  12. World Health Organization: Breast fact sheet. Technical report, International Agency for Research on Cancer (2018). http://gco.iarc.fr/today/data/factsheets/cancers/20-Breast-fact-sheet.pdf

  13. Shin, H.C., et al.: Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning. IEEE Trans. Med. Imaging 35(5), 1285–1298 (2016)

    Article  Google Scholar 

  14. Xu, Z., Jin, R., Yang, H., King, I., Lyu, M.R.: Simple and efficient multiple kernel learning by group lasso. In: Proceedings of the 27th International Conference on Machine Learning (ICML 2010), pp. 1175–1182. Citeseer (2010)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Gloria M. Díaz .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Marín-Castrillón, D.M., Osorno-Castillo, K., Hernández, L.M., Castro-Ospina, A.E., Díaz, G.M. (2020). Characterizing ResNet Filters to Identify Positive and Negative Findings in Breast MRI Sequences. In: Figueroa-García, J.C., Garay-Rairán, F.S., Hernández-Pérez, G.J., Díaz-Gutierrez, Y. (eds) Applied Computer Sciences in Engineering. WEA 2020. Communications in Computer and Information Science, vol 1274. Springer, Cham. https://doi.org/10.1007/978-3-030-61834-6_26

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-61834-6_26

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-61833-9

  • Online ISBN: 978-3-030-61834-6

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics