Abstract
Training of deep learning models requires large and properly labeled datasets, which make unfeasible using it for developing computer-aided diagnosis systems in medical imaging. As an alternative, transfer learning has shown to be useful to extract deep features using architectures previously trained. In this paper, a new method for classification of breast lesions in magnetic resonance imaging is proposed, which uses the pre-trained ResNet-50 architecture for extracting a set of image features that are then used by an SVM model for differentiating between positive and negative findings. We take advantage of the ResNet-50 architecture for introducing volumetric lesion information by including three consecutive slices per lesion. Filters used as feature descriptors were selected using a multiple kernel learning method, which allows identifying those filters that provide the most relevant information for the classification task. Additionally, instead of using raw filters as features, we propose to characterize it using statistical moments, which improves the classification performance. The evaluation was conducted using a set of 146 ROIs extracted from three sequences proposed for designing abbreviated breast MRI protocols (DCE, ADC, and T2-Vista). Positive findings were identified with an AUC of 82.4 using a DCE image, and 81.08 fusing features from the three sequences.
This work was supported by MINCIENCIAS, Instituto Tecnológico Metropolitano and Ayudas Diagnósticas Sura (RC740-2017 Project).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Antropova, N., Huynh, B., Giger, M.: SU-D-207B-06: predicting breast cancer malignancy on DCE-MRI data using pre-trained convolutional neural networks. Med. Phys. 43(6, Pt. 4), 3349–3350 (2016)
Antropova, N., Abe, H., Giger, M.L.: Use of clinical MRI maximum intensity projections for improved breast lesion classification with deep convolutional neural networks. J. Med. Imaging 5(1), 014503 (2018)
Areiza-Laverde, H.J., Castro-Ospina, A.E., Hernández, M.L., Díaz, G.M.: A novel method for objective selection of information sources using multi-kernel SVM and local scaling. Sensors 20(14), 3919 (2020)
Areiza-Laverde, H.J., Díaz, G.M., Castro-Ospina, A.E.: Feature group selection using MKL penalized with \(\ell _1\)-norm and SVM as base learner. In: Figueroa-García, J.C., López-Santana, E.R., Rodriguez-Molano, J.I. (eds.) WEA 2018. CCIS, vol. 915, pp. 136–147. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00350-0_12
Canziani, A., Paszke, A., Culurciello, E.: An analysis of deep neural network models for practical applications. arXiv preprint arXiv:1605.07678 (2016)
He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)
Hu, Q., Whitney, H.M., Edwards, A., Papaioannou, J., Giger, M.L.: Radiomics and deep learning of diffusion-weighted MRI in the diagnosis of breast cancer. In: Medical Imaging 2019: Computer-Aided Diagnosis, vol. 10950, p. 109504A. International Society for Optics and Photonics (2019)
Leithner, D., Moy, L., Morris, E.A., Marino, M.A., Helbich, T.H., Pinker, K.: Abbreviated MRI of the breast: does it provide value? J. Magn. Reson. Imaging (2018)
Marrone, S., Piantadosi, G., Fusco, R., Petrillo, A., Sansone, M., Sansone, C.: An investigation of deep learning for lesions malignancy classification in breast DCE-MRI. In: Battiato, S., Gallo, G., Schettini, R., Stanco, F. (eds.) ICIAP 2017. LNCS, vol. 10485, pp. 479–489. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-68548-9_44
Murtaza, G., et al.: Deep learning-based breast cancer classification through medical imaging modalities: state of the art and research challenges. Artif. Intell. Rev. 53(3), 1655–1720 (2019). https://doi.org/10.1007/s10462-019-09716-5
Narváez, F., Díaz, G., Poveda, C., Romero, E.: An automatic BI-RADS description of mammographic masses by fusing multiresolution features. Expert Syst. Appl. 74, 82–95 (2017)
World Health Organization: Breast fact sheet. Technical report, International Agency for Research on Cancer (2018). http://gco.iarc.fr/today/data/factsheets/cancers/20-Breast-fact-sheet.pdf
Shin, H.C., et al.: Deep convolutional neural networks for computer-aided detection: CNN architectures, dataset characteristics and transfer learning. IEEE Trans. Med. Imaging 35(5), 1285–1298 (2016)
Xu, Z., Jin, R., Yang, H., King, I., Lyu, M.R.: Simple and efficient multiple kernel learning by group lasso. In: Proceedings of the 27th International Conference on Machine Learning (ICML 2010), pp. 1175–1182. Citeseer (2010)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2020 Springer Nature Switzerland AG
About this paper
Cite this paper
Marín-Castrillón, D.M., Osorno-Castillo, K., Hernández, L.M., Castro-Ospina, A.E., Díaz, G.M. (2020). Characterizing ResNet Filters to Identify Positive and Negative Findings in Breast MRI Sequences. In: Figueroa-García, J.C., Garay-Rairán, F.S., Hernández-Pérez, G.J., Díaz-Gutierrez, Y. (eds) Applied Computer Sciences in Engineering. WEA 2020. Communications in Computer and Information Science, vol 1274. Springer, Cham. https://doi.org/10.1007/978-3-030-61834-6_26
Download citation
DOI: https://doi.org/10.1007/978-3-030-61834-6_26
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-61833-9
Online ISBN: 978-3-030-61834-6
eBook Packages: Computer ScienceComputer Science (R0)