Abstract
Knowledge graphs can support different types of services and are a valuable source. Automatic methods have been widely used in many domains to construct the knowledge graphs. However, it is more complex and difficult in the medical domain. There are three reasons: (1) the complex and obscure nature of medical concepts and relations, (2) inconsistent standards and (3) heterogeneous multi-source medical data with low quality like EMRs (Electronic Medical Records). Therefore, the quality of knowledge requires a lot of manual efforts from experts in the process. In this paper, we introduce an overall framework called DocKG that provides insights on where and when to import manual efforts in the process to construct a health knowledge graph. In DocKG, four tools are provided to facilitate the doctors’ contribution, i.e. matching synonym, discovering and editing new concepts, annotating concepts and relations, together with establishing rule base. The application for cardiovascular diseases demonstrates that DocKG could improve the accuracy and efficiency of medical knowledge graph construction.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Wu, C., et al.: Prediction of fatty liver disease using machine learning algorithms. In: Computer Methods and Programs in Biomedicine, vol. 170, pp. 23–29 (2019)
MartĂnez RodrĂguez, J.-L., LĂłpez ArĂ©valo, I., Rios Alvarado, A.B.: OpenIE-based approach for Knowledge Graph construction from text. Expert Syst. Appl. 113, 339–355 (2018)
Wang, C., Ma, X., Chen, J., Chen, J.: Information extraction and knowledge graph construction from geoscience literature. Comput. Geosci. 112, 112–120 (2018)
Qi, C., Song, Q., Zhang, P., Yuan, H.: Cn-MAKG: china meteorology and agriculture knowledge graph construction based on semi-structured data. In: ICIS: IEEE Computer Society, pp. 692–696 (2018)
Ye, M.: Text Mining for Building a Biomedical Knowledge Base on Diseases, Risk Factors, and Symptoms. Germany: Max-Planck-Institute for Informatics (2011)
Rotmensch, M., Halpern, Y., Tlimat, A., Horng, S., Sontag, D.: Learning a health knowledge graph from electronic medical records. Sci. Rep. 7(1), 5994 (2017)
Chen, P., Lu, Y., Zheng, V.W., Chen, X., Yang, B.: KnowEdu: a system to construct knowledge graph for education. IEEE Access 6, 31553–31563 (2018)
Hyeon, J., Oh, K., Kim, Y.J., Chung, H., Kang, B.H., Choi, H.-J.: Constructing an initial knowledge base for medical domain expert system using induct RDR. In: BigComp: IEEE Computer Society, pp. 408–410 (2016)
Savova, G.K., et al.: Mayo clinical text analysis and knowledge extraction system (cTAKES): architecture, component evaluation and applications. J. Am. Med. Inf. Assoc. 17, 507–513 (2010)
Gatta, R., et al.: Generating and Comparing Knowledge Graphs of Medical Processes Using pMineR. In: K-CAP: ACM, pp. 36:1–36:4 (2017)
Afzal, M., Hussain, M., Khan, W.A., Ali, T., Lee, S., Kang, B.H.: KnowledgeButton: an evidence adaptive tool for CDSS and clinical research. In: INISTA: IEEE, pp. 273–280 (2014)
Kejriwal, M., Szekely, P.: myDIG: personalized illicit domain-specific knowledge discovery with no programming. In: Future Internet, vol. 11, p. 59 (2019). https://doi.org/10.3390/fi11030059
Amaral, A.D., Angelova, G., Bontcheva, K., Mitkov, R.: Rule-based named entity extraction for ontology population. In: RANLP: RANLP Organising Committee/ACL, pp. 58–62 (2013)
Yang, Y., et al.: A study on interaction in human-in-the-loop machine learning for text analytics. In: IUI Workshops: CEUR-WS.org, (CEUR Workshop Proceedings), vol. 2327 (2019)
Holzinger, A.: Interactive machine learning for health informatics: when do we need the human-in-the-loop? Brain Inf. 3(2), 119–131 (2016)
da Silva, T.L.C., et al.: Improving named entity recognition using deep learning with human in the loop. In: EDBT: OpenProceedings.org., pp. 594–597 (2019)
Acknowledgments
This work was supported by NSFC (91646202), National Key R&D Program of China (2018YFB1404400, 2018YFB1402700).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this paper
Cite this paper
Sheng, M. et al. (2019). DocKG: A Knowledge Graph Framework for Health with Doctor-in-the-Loop. In: Wang, H., Siuly, S., Zhou, R., Martin-Sanchez, F., Zhang, Y., Huang, Z. (eds) Health Information Science. HIS 2019. Lecture Notes in Computer Science(), vol 11837. Springer, Cham. https://doi.org/10.1007/978-3-030-32962-4_1
Download citation
DOI: https://doi.org/10.1007/978-3-030-32962-4_1
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-32961-7
Online ISBN: 978-3-030-32962-4
eBook Packages: Computer ScienceComputer Science (R0)