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ORCIDLing Luo 0001
Person information
- affiliation: National Institutes of Health, Bethesda, MD, USA
- affiliation (former): Dalian University of Technology, College of Computer Science and Technology, China
Other persons with the same name
- Ling Luo — disambiguation page
- Ling Luo 0002
![[0000-0002-1363-8308]](/https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0000-0002-1363-8308")
— University of Melbourne, School of Computing and Information Systems, Australia (and 2 more) - Ling Luo 0003 — niversity of Science and Technology of China, Department of Automation, Hefei, China
- Ling Luo 0004 — State Grid Shanghai Electric Power Research Institute, Shanghai, China (and 1 more)
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2020 – today
- 2025
[j26]Yumeng Yang, Hongfei Lin, Zhihao Yang, Yijia Zhang, Di Zhao, Ling Luo:
LCDL: Classification of ICD codes based on disease label co-occurrence dependency and LongFormer with medical knowledge. Artif. Intell. Medicine 160: 103041 (2025)- 2024
- [j25]Rezarta Islamaj, Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Tiago Melo Almeida, Richard A. A. Jonker, Sofia I R. Conceição, Diana F. Sousa, Cong-Phuoc Phan, Jung-Hsien Chiang, Jiru Li, Dinghao Pan, Wilailack Meesawad, Richard Tzong-Han Tsai, M. Janina Sarol, Gibong Hong, Airat Valiev, Elena Tutubalina, Shao-Man Lee, Yi-Yu Hsu, Mingjie Li, Karin Verspoor, Zhiyong Lu:
The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII. Database J. Biol. Databases Curation 2024 (2024) - [j24]Rezarta Islamaj, Chih-Hsuan Wei, Po-Ting Lai, Ling Luo, Cathleen Coss, Preeti Gokal Kochar, Nicholas Miliaras, Oleg Rodionov, Keiko Sekiya, Dorothy Trinh, Deborah Whitman, Zhiyong Lu:
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop. Database J. Biol. Databases Curation 2024 (2024) - [j23]Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin:
Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks. J. Am. Medical Informatics Assoc. 31(9): 1865-1874 (2024) - [c19]Zeyuan Ding, Zhihao Yang, Ling Luo, Yuanyuan Sun, Hongfei Lin:
From Retrieval to Generation: A Simple and Unified Generative Model for End-to-End Task-Oriented Dialogue. AAAI 2024: 17907-17914 - [c18]Yongle Kong, Zhihao Yang, Ling Luo, Zeyuan Ding, Lei Wang, Wei Liu, Yin Zhang, Bo Xu, Jian Wang, Yuanyuan Sun, Zhehuan Zhao, Hongfei Lin:
Document Embeddings Enhance Biomedical Retrieval-Augmented Generation. BIBM 2024: 962-967 - [c17]Jiru Li, Yuanyuan Sun, Zhihao Yang, Ling Luo, Lei Wang, Wei Liu, Yin Zhang, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Hongfei Lin:
Biomedical Document-level Relation Extraction with Coreference and Anaphor Graphs. BIBM 2024: 982-987 - [c16]Liangyu Gao, Zhihao Yang, Haixin Tan, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Yuanyuan Sun, Hongfei Lin:
Document-level Biomedical Relation Extraction Based on Relation-guided Entity-level Graphs. BIBM 2024: 3214-3217 - [c15]Liangyu Gao, Zhihao Yang, Jinzhong Ning, Kai Ma, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Yuanyuan Sun, Hongfei Lin:
Biomedical Event Extraction as Semantic Segmentation. BIBM 2024: 3218-3221 - [c14]Senbo Tu, Zhihao Yang, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Hongfei Lin:
Efficient Knowledge Graph Embedding Framework to Alleviate Data Sparsity for Polypharmacy Side Effects Prediction. BIBM 2024: 5127-5134 - [c13]Jinzhong Ning, Yuanyuan Sun, Bo Xu, Zhihao Yang, Ling Luo, Hongfei Lin:
Breaking the Boundaries: A Unified Framework for Chinese Named Entity Recognition Across Text and Speech. EMNLP (Findings) 2024: 1250-1260 - [c12]Liangyu Gao, Zhihao Yang, Ling Luo, Wenfei Liu, Hongfei Lin, Jian Wang:
EDNER: Edge Detection for Named Entity Recognition. NLPCC (2) 2024: 149-160 - [i9]Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu:
PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge. CoRR abs/2401.11048 (2024) - [i8]Po-Ting Lai, Elisabeth Coudert, Lucila Aimo, Kristian B. Axelsen, Lionel Breuza, Edouard De Castro, Marc Feuermann, Anne Morgat, Lucille Pourcel, Ivo Pedruzzi, Sylvain Poux, Nicole Redaschi, Catherine Rivoire, Anastasia Sveshnikova, Chih-Hsuan Wei, Robert Leaman, Ling Luo, Zhiyong Lu, Alan J. Bridge:
EnzChemRED, a rich enzyme chemistry relation extraction dataset. CoRR abs/2404.14209 (2024) - 2023
- [j22]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu:
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning. Bioinform. 39(5) (2023) - [j21]Chih-Hsuan Wei, Ling Luo, Rezarta Islamaj, Po-Ting Lai, Zhiyong Lu:
GNorm2: an improved gene name recognition and normalization system. Bioinform. 39(10) (2023) - [j20]Tudor Groza, Honghan Wu, Marcel E. Dinger, Daniel Danis, Coleman Hilton, Anita Bagley, Jon R. Davids, Ling Luo, Zhiyong Lu, Peter N. Robinson:
Term-BLAST-like alignment tool for concept recognition in noisy clinical texts. Bioinform. 39(12) (2023) - [j19]Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu:
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets. J. Biomed. Informatics 146: 104487 (2023) - [c11]Haixin Tan, Zhihao Yang, Zeyuan Ding, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang:
Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps. BIBM 2023: 1437-1442 - [c10]Yuqi Liu, Zhihao Yang, Jinzhong Ning, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang:
Joint Biomedical Entity and Relation Extraction Based on Triple Region Vertices. BIBM 2023: 2117-2120 - [i7]Po-Ting Lai, Chih-Hsuan Wei, Ling Luo, Qingyu Chen, Zhiyong Lu:
BioREx: Improving Biomedical Relation Extraction by Leveraging Heterogeneous Datasets. CoRR abs/2306.11189 (2023) - [i6]Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin:
Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks. CoRR abs/2311.11608 (2023) - 2022
- [j18]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu:
BioRED: a rich biomedical relation extraction dataset. Briefings Bioinform. 23(5) (2022) - [j17]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj, Zhiyong Lu:
Assigning species information to corresponding genes by a sequence labeling framework. Database J. Biol. Databases Curation 2022(2022) (2022) - [j16]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Zhiyong Lu:
A sequence labeling framework for extracting drug-protein relations from biomedical literature. Database J. Biol. Databases Curation 2022(2022) (2022) - [j15]Shankai Yan, Ling Luo, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu:
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology. J. Biomed. Informatics 129: 104059 (2022) - [c9]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu:
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. AMIA 2022 - [c8]Shankai Yan, Ling Luo, Li Fang, Daniel Veltri, Andrew J. Oler, Rajarshi Ghosh, Chih-Hsuan Wei, Morgan Similuk, Kai Wang, Zhiyong Lu:
PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles. AMIA 2022 - [i5]Ling Luo, Po-Ting Lai, Chih-Hsuan Wei, Cecilia N. Arighi, Zhiyong Lu:
BioRED: A Comprehensive Biomedical Relation Extraction Dataset. CoRR abs/2204.04263 (2022) - [i4]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Qingyu Chen, Rezarta Islamaj Dogan, Zhiyong Lu:
Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework. CoRR abs/2205.03853 (2022) - [i3]Ling Luo, Chih-Hsuan Wei, Po-Ting Lai, Robert Leaman, Qingyu Chen, Zhiyong Lu:
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning. CoRR abs/2211.16944 (2022) - 2021
- [j14]Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu:
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology. Bioinform. 37(13): 1884-1890 (2021) - [j13]Alexis Allot, Kyubum Lee, Qingyu Chen, Ling Luo, Zhiyong Lu:
LitSuggest: a web-based system for literature recommendation and curation using machine learning. Nucleic Acids Res. 49(Webserver-Issue): 352-358 (2021) - 2020
- [j12]Zhiheng Li, Zhihao Yang, Yang Xiang, Ling Luo, Yuanyuan Sun, Hongfei Lin:
Exploiting sequence labeling framework to extract document-level relations from biomedical texts. BMC Bioinform. 21(1): 125 (2020) - [j11]Ling Luo, Zhihao Yang, Mingyu Cao, Lei Wang, Yin Zhang, Hongfei Lin:
A neural network-based joint learning approach for biomedical entity and relation extraction from biomedical literature. J. Biomed. Informatics 103: 103384 (2020) - [j10]Zhiheng Li, Zhihao Yang, Ling Luo, Yang Xiang, Hongfei Lin:
Exploiting adversarial transfer learning for adverse drug reaction detection from texts. J. Biomed. Informatics 106: 103431 (2020) - [j9]Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang:
KGHC: a knowledge graph for hepatocellular carcinoma. BMC Medical Informatics Decis. Mak. 20-S(3): 135 (2020) - [i2]Ling Luo, Shankai Yan, Po-Ting Lai, Daniel Veltri, Andrew J. Oler, Sandhya Xirasagar, Rajarshi Ghosh, Morgan Similuk, Peter N. Robinson, Zhiyong Lu:
PhenoTagger: A Hybrid Method for Phenotype Concept Recognition using Human Phenotype Ontology. CoRR abs/2009.08478 (2020) - [i1]Qingyu Chen, Robert Leaman, Alexis Allot, Ling Luo, Chih-Hsuan Wei, Shankai Yan, Zhiyong Lu:
Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP). CoRR abs/2010.16413 (2020)
2010 – 2019
- 2019
- [j8]Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang:
A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature. IEEE Access 7: 151034-151046 (2019) - [j7]Rezarta Islamaj Dogan, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu:
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database J. Biol. Databases Curation 2019: bay147 (2019) - [j6]Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang:
KeSACNN: a protein-protein interaction article classification approach based on deep neural network. Int. J. Data Min. Bioinform. 22(2): 131-148 (2019) - [c7]Jingkun Feng, Zhihao Yang, Zhiqiang Liu, Ling Luo, Hongfei Lin, Jian Wang:
DUTIR at TREC 2019: Precision Medicine Track. TREC 2019 - 2018
- [j5]Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang:
Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach. Database J. Biol. Databases Curation 2018: bay097 (2018) - [j4]Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang:
An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition. Bioinform. 34(8): 1381-1388 (2018) - [j3]Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin:
A neural network approach to chemical and gene/protein entity recognition in patents. J. Cheminformatics 10(1): 65:1-65:10 (2018) - [c6]Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang:
HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms. BIBM 2018: 1-3 - [c5]Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang:
Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach. BIBM 2018: 467-469 - [c4]Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang:
A multi-task learning based approach to biomedical entity relation extraction. BIBM 2018: 680-682 - [c3]Ling Luo, Nan Li, Shuaichi Li, Zhihao Yang, Hongfei Lin:
DUTIR at the CCKS-2018 Task1: A Neural Network Ensemble Approach for Chinese Clinical Named Entity Recognition. CCKS Tasks 2018: 7-12 - 2017
- [j2]Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang:
An attention-based effective neural model for drug-drug interactions extraction. BMC Bioinform. 18(1): 445:1-445:11 (2017) - 2016
- [j1]Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang:
Drug drug interaction extraction from biomedical literature using syntax convolutional neural network. Bioinform. 32(22): 3444-3453 (2016) - [c2]Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang:
ML-CNN: A novel deep learning based disease named entity recognition architecture. BIBM 2016: 794 - 2015
- [c1]Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao:
Deep neural network based protein-protein interaction extraction from biomedical literature. BIBM 2015: 1156
Coauthor Index
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