🧬 gget enables efficient querying of genomic reference databases
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
minimal example implementations for bioinformatics workflow managers
RNA velocity estimation in Python
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Identification of differential RNA modifications from nanopore direct RNA sequencing
Finder of Somatic Fusion Genes in RNA-seq data
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Analyze your RNA sequencing data without writing a single line of code
Publication quality NGS track plotting
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
This repository contains the python package for Helical
🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
RiboNucleic Acid (RNA) Language Model
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
A tool to identify, orient, trim and rescue full length cDNA reads
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